Github nfcore mag

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Webmag/mag.nf at master · nf-core/mag · GitHub nf-core / mag Public Notifications Star Code master mag/workflows/mag.nf Go to file Cannot retrieve contributors at this time 822 … Webnf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes. Sequence assembly › Taxonomic classification › Genome annotation › Read binning › Credits & Support Sabrina Krakau sabrina.krakau at qbic.uni-tuebingen.de ORCID › Daniel Straub ORCID › Hadrien Gourlé ORCID › Gisela …

Binning & bin refinement extension · Issue #252 · nf-core/mag - GitHub

WebSep 17, 2024 · nf-core / mag Public Notifications Fork 67 Star 117 Code Issues 37 Pull requests 2 Actions Security Insights New issue singularity: No such file or directory #234 Closed ropolomx opened this issue · 2 comments ropolomx commented on Sep 17, 2024 • edited Command line: as above See error: as above The command used to run the pipeline Webnf-core/mag: Output Introduction This document describes the output produced by the pipeline. Most of the plots are taken from the MultiQC report, which summarises results at the end of the pipeline. The directories listed below will be created in the results directory after the pipeline has finished. 鳳周辺デザート

GitHub - nf-core/mag: Assembly and binning of …

Webnf-core / mag Public Notifications Fork 74 Star 126 Code Issues 48 Pull requests 5 Actions Security Insights Releases Tags Mar 2 jfy133 2.3.0 c9468cb Compare mag 2.3.0 - Red Cow Latest Added #350 - Adds support for CheckM as alternative bin completeness and QC tool (added by @jfy133 and @skrakau) WebFeb 2, 2024 · We present the nf-core/mag pipeline for metagenome assembly, binning and taxonomic classification. It can optionally combine short and long reads to increase assembly continuity and utilize sample-wise group … WebAug 14, 2024 · nf-core / mag Public Notifications Fork 58 Star 100 Code Issues 23 Pull requests 2 Actions Security Insights New issue CAT: Database was built with a different version of Diamond and is incompatible. #90 Closed ropolomx opened this issue on Aug 14, 2024 · 9 comments ropolomx commented on Aug 14, 2024 • edited Author 鳳日払いアルバイト

pipeline halts when quast finds no min length contigs #40 - GitHub

`NFCORE_MAG:MAG:PROKKA (MEGAHIT-group-14.13)` …

Webnf-core is a community-led project to develop a set of best-practice pipelines built using Nextflow. Pipelines are governed by a set of guidelines, enforced by community code reviews and automatic code testing. What is nf-core tools? nf-core provides a suite of helper tools aim to help users run and develop pipelines. WebNov 16, 2024 · Currently, nf-core/mag is using almost exclusively local modules because we did DSL2 conversion before modules were set up in a stable way. Also, please try to realize also for Maxbin2 the function of --binning_map_mode Member Author jfy133 commented on Nov 17, 2024 Thanks for the feedback @d4straub , I take everything into … taskbar and start menu propertiesWebMar 30, 2024 · Issue with MAG_DEPTHS_PLOT · Issue #417 · nf-core/mag · GitHub Issue with MAG_DEPTHS_PLOT #417 Open x-rv opened this issue 12 hours ago · 3 comments x-rv commented 12 hours ago MAG_DEPTHS_PLOT Sign up for free to join this conversation on GitHub . Already have an account? Sign in to comment Assignees No one assigned … 鳳市民プール

"Webnf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes. The pipeline is built using Nextflow, a workflow tool to run … " - Github nfcore mag

Github nfcore mag

`NFCORE_MAG:MAG:PROKKA (MEGAHIT-group-14.13)` …

WebJun 10, 2024 · nf-core / mag Public Notifications Fork 74 Star 126 Code Issues 46 Pull requests 5 Actions Security Insights New issue MAG:METABAT2_BINNING:METABAT2 Fails with missing fasta #211 Closed vpeddu opened this issue on Jun 10, 2024 · 2 comments vpeddu commented on Jun 10, 2024 • edited Hardware: HPC Executor: local … WebKey Points. nf-core is a community-led project to develop a set of best-practice pipelines built using the Nextflow workflow management system. The nf-core tool (nf-core) is a suite of helper tools that aims to help people run and develop nf-core pipelines.

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WebMar 13, 2024 · nf-core /magPublic Notifications Fork 69 Star 125 Code Issues38 Pull requests3 Actions Security Insights More Code Issues Pull requests Actions Security … WebNov 15, 2024 · nf-core / mag Public Notifications Fork 69 Star 125 Code Issues 38 Pull requests 3 Actions Security Insights New issue Bump up BUSCO version to 5.4.3 and escape lack of marker genes #352 Merged alexhbnr merged 3 commits into nf-core: dev from alexhbnr: busco_nomarkers on Nov 15, 2024 +12 −3 Conversation 4 Commits 3 …

Webmag/nextflow.config at master · nf-core/mag · GitHub nf-core / mag Public Notifications Fork Star Code Actions Security Insights master mag/nextflow.config Go to file Cannot retrieve contributors at this time 364 lines (329 sloc) 14.2 KB Raw Blame /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ WebNov 13, 2024 · In the case of choosing the "auto select lineage" mode of BUSCO, the nf-core/mag reports that the pipeline failed in case BUSCO could identify the root lineage, e.g. bacteria, but not a specific lineage, despite BUSCO finishing without an error message.

WebTools docs are built using GitHub Actions on the nf-core/tools repo using Sphinx. These actions sync the built HTML files via FTP. GitHub web hooks. There is a GitHub web … Webnf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes. The pipeline is built using Nextflow, a workflow tool to run … Assembly and binning of metagenomes. Contribute to nf-core/mag development … Assembly and binning of metagenomes. Contribute to nf-core/mag development … GitHub is where people build software. More than 65 million people use GitHub … 21 Branches - GitHub - nf-core/mag: Assembly and binning of metagenomes Initial release of nf-core/mag, created with the nf-core template. Added. short and … Modules - GitHub - nf-core/mag: Assembly and binning of metagenomes 58 Forks - GitHub - nf-core/mag: Assembly and binning of metagenomes Python 10.3 - GitHub - nf-core/mag: Assembly and binning of metagenomes

Webmag/busco.nf at master · nf-core/mag · GitHub nf-core / mag Public Notifications Fork Star master mag/modules/local/busco.nf Go to file Cannot retrieve contributors at this …

Webnf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning, and annotation of metagenomes. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible. 鳳占やかた中華街おすすめWebMar 7, 2024 · Deactivate CONCOCT binning from full tests · Issue #403 · nf-core/mag · GitHub Deactivate CONCOCT binning from full tests #403 Open jfy133 opened this issue on Mar 7 · 2 comments Member jfy133 commented on Mar 7 Description of the bug Command used and terminal output Relevant files System information No response … 鳳映画ポップコーンWebBy default, nf-core/mag runs CheckM with the check_lineage workflow that places genome bins on a reference tree to define lineage-marker sets, to check for completeness and contamination based on lineage-specific marker genes. and then subsequently runs qa to generate the summary files. taskbar and menu propertiesWebNov 4, 2024 · nf-core/magPublic Notifications Fork 65 Star 109 Code Issues31 Pull requests5 Actions Security Insights More Code Issues Pull requests Actions Security Insights New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Pick a username Email … 鳳堺スイーツWebDec 16, 2024 · Add skip_clipping parameter to skip fastp or adapterremoval by prototaxites · Pull Request #361 · nf-core/mag · GitHub Adds a parameter to skip read QC using either fastp or adapterremoval, to allow the user to jump in straight to assembly if they have pre-processed reads. 鳳映画館レイトショー鳳座敷ランチWebunable to execute the process NFCORE_MAG:MAG:KRONA_DB #369 opened 2 weeks ago by mathavanpu Enable more options to vary the BowTie2 alignment parameters … taskbar and task menu properties